Issue
EPL
Volume 80, Number 3, November 2007
Article Number 38003
Number of page(s) 6
Section Interdisciplinary Physics and Related Areas of Science and Technology
DOI http://dx.doi.org/10.1209/0295-5075/80/38003
Published online 10 October 2007
EPL, 80 (2007) 38003
DOI: 10.1209/0295-5075/80/38003

Resonance mode in DNA dynamics

S. Zdravkovic1 and M. V. Sataric2

1  Fakultet tehnickih nauka, Univerzitet u Pristini - Kosovska Mitrovica, Srbija
2  Fakultet tehnickih nauka, Univerzitet u Novom Sadu - 21000 Novi Sad, Srbija

szdravk@etf.bg.ac.yu
bomisat@neobee.net

received 19 May 2007; accepted in final form 12 September 2007; published November 2007
published online 10 October 2007

Abstract
In this article we use Peyrard-Bishop-Dauxois model (PBD) to study the nonlinear oscillations of DNA nucleotides of extremely high amplitude (EHA) leading to unzipping of DNA chain in the context of the process of replication. We give arguments that the EHA mode is nothing but the resonance mode (RM). We launched an idea about how molecular mechano-chemical energy transduction can be the origin of the RM. We compared some parameters of the solitonic wave in DNA in resonant and non-resonant regime.

PACS
87.15.-v - Biomolecules: structure and physical properties.
31.15.Qg - Molecular dynamics and other numerical methods.
87.14.Gg - DNA, RNA.

© Europhysics Letters Association 2007